Stem-loop ssc-mir-132

Accession

MI0022129

Description

Sus scrofa ssc-mir-132 precursor miRNA

Literature search

29 open access papers mention ssc-mir-132
(85 sentences)

Sequence

178379 reads, 258.0 reads per million, 206 experiments

cuccagggcaACCGUGGCUUUCGAUUGUUACUgugggaaccggaggUAACAGUCUACAGCCAUGGUCGccccgcagca
.....((((.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).)))).......

Structure

--cucca    a         UUC          -g   g 
       gggc ACCGUGGCU   GAUUGUUACU  ugg  
       |||| |||||||||   ||||||||||  ||| a
       cccG UGGUACCGA   CUGACAAUgg  gcc  
acgacgc    C         CAU          ag   a 

Annotation confidence High

Genome context

chr12: 50015722-50015799 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-132

Mature ssc-miR-132-5p

• Accession: MIMAT0052680
• Description: Sus scrofa ssc-miR-132-5p mature miRNA
• Sequence: 11 - ACCGUGGCUUUCGAUUGUUACU - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-132-3p

• Accession: MIMAT0025361
• Description: Sus scrofa ssc-miR-132-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGCCAUGGUCG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328