Stem-loop ssc-mir-144

Accession

MI0022132

Description

Sus scrofa ssc-mir-144 precursor miRNA

Literature search

25 open access papers mention ssc-mir-144
(36 sentences)

Sequence

303357 reads, 343.0 reads per million, 207 experiments

gcccuggcugGGAUAUCAUCAUAUACUGUAAGUUugcgaugagacacUACAGUAUAGAUGAUGUACUaguccgggu
((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))))

Structure

    u      G        A         -A    gc 
gccc ggcugG AUAUCAUC UAUACUGUA  GUUu  g
|||| |||||| |||||||| |||||||||  ||||   
uggg cugaUC UGUAGUAG AUAUGACAU  caga  a
    c      A        -         ca    gu 

Annotation confidence High

Genome context

chr12: 47176953-47177028 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-144

Mature ssc-miR-144-5p

• Accession: MIMAT0052683
• Description: Sus scrofa ssc-miR-144-5p mature miRNA
• Sequence: 11 - GGAUAUCAUCAUAUACUGUAAGUU - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-144-3p

• Accession: MIMAT0025364
• Description: Sus scrofa ssc-miR-144-3p mature miRNA
• Sequence: 48 - UACAGUAUAGAUGAUGUACU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328