Stem-loop ssc-mir-144

Accession

MI0022132

Description

Sus scrofa ssc-mir-144 precursor miRNA

Literature search

11 open access papers mention ssc-mir-144
(18 sentences)

Sequence

1215 reads, 287 reads per million, 11 experiments

gcccuggcugggauaucaucauauacuguaaguuugcgaugagacacUACAGUAUAGAUGAUGUACuaguccgggu
((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))))

Structure

    u      g        a         -a    gc 
gccc ggcugg auaucauc uauacugua  guuu  g
|||| |||||| |||||||| |||||||||  ||||   
uggg cugauC UGUAGUAG AUAUGACAU  caga  a
    c      A        -         ca    gu 

Annotation confidence Low

Genome context

chr12: 47176953-47177028 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-144

Mature ssc-miR-144

• Accession: MIMAT0025364
• Description: Sus scrofa ssc-miR-144 mature miRNA
• Sequence: 48 - UACAGUAUAGAUGAUGUAC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328