Stem-loop ssc-mir-194a

Accession

MI0022137

Description

Sus scrofa ssc-mir-194a precursor miRNA

Literature search

13 open access papers mention ssc-mir-194a
(35 sentences)

Sequence

7639691 reads, 2447.0 reads per million, 201 experiments

ugccacccccUGUAACAGCAACUCCAUGUGGAagugcccacuaguuCCAGUGGGGCUGCUGUUAUCUGgggugggg
..(((((((..(((((((((.((((((.(((((.((.....)).))))))))))).)))))))))..)))))))..

Structure

ug       cU         A      G     g  c 
  ccacccc  GUAACAGCA CUCCAU UGGAa ug c
  |||||||  ||||||||| |||||| ||||| || c
  ggugggG  UAUUGUCGU GGGGUG ACCuu au a
gg       UC         C      -     g  c 

Annotation confidence High

Genome context

chr2: 6416779-6416854 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-194a

Mature ssc-miR-194a-5p

• Accession: MIMAT0025368
• Description: Sus scrofa ssc-miR-194a-5p mature miRNA
• Sequence: 11 - UGUAACAGCAACUCCAUGUGGA - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-194a-3p

• Accession: MIMAT0037465
• Description: Sus scrofa ssc-miR-194a-3p mature miRNA
• Sequence: 47 - CCAGUGGGGCUGCUGUUAUCUG - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252