Stem-loop ssc-mir-212

Accession

MI0022140

Description

Sus scrofa ssc-mir-212 precursor miRNA

Literature search

12 open access papers mention ssc-mir-212
(30 sentences)

Sequence

74050 reads, 80.0 reads per million, 200 experiments

gcgcgccggcACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucagUAACAGUCUCCAGUCACGGCCAccgacgccug
..(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).)))...

Structure

-gc   c   -cA  U     CU      C      ccc   c 
   gcg cgg   CC UGGCU  AGACUG UUACUg   ggg  
   ||| |||   || |||||  |||||| ||||||   ||| c
   cgc gcc   GG ACUGA  UCUGAC AAUgac   ccc  
guc   a   ACC  C     CC      -      --u   g 

Annotation confidence High

Genome context

chr12: 50016151-50016232 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-212

Mature ssc-miR-212-5p

• Accession: MIMAT0025370
• Description: Sus scrofa ssc-miR-212-5p mature miRNA
• Sequence: 11 - ACCUUGGCUCUAGACUGCUUACU - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-212-3p

• Accession: MIMAT0052687
• Description: Sus scrofa ssc-miR-212-3p mature miRNA
• Sequence: 51 - UAACAGUCUCCAGUCACGGCCA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328