Stem-loop ssc-mir-216-2

Accession

MI0022141

Description

Sus scrofa ssc-mir-216-2 precursor miRNA

Literature search

4 open access papers mention ssc-mir-216-2
(6 sentences)

Sequence

26856 reads, 24.0 reads per million, 123 experiments

ugaguuggcuUAAUCUCAGCUGGCAACUGUGAGauguucauacaauccccCACAGUGGUCUCUGGGAUUAUGcuaaacagag
....(((((.(((((((((..(((.((((((.(((((....)).)))...)))))).))).))))))))).)))))......

Structure

--ugag     u         CU   A      --A   -  u 
      uuggc UAAUCUCAG  GGC ACUGUG   Gau gu c
      ||||| |||||||||  ||| ||||||   ||| ||  
      aaucG AUUAGGGUC  CUG UGACAC   cua ca a
gagaca     U         -U   G      ccc   a  u 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-216-5p

• Accession: MIMAT0002130
• Description: Sus scrofa ssc-miR-216-5p mature miRNA
• Sequence: 11 - UAAUCUCAGCUGGCAACUGUGAG - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-216-3p

• Accession: MIMAT0052555
• Description: Sus scrofa ssc-miR-216-3p mature miRNA
• Sequence: 51 - CACAGUGGUCUCUGGGAUUAUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328