Stem-loop ssc-mir-452

Accession

MI0022149

Description

Sus scrofa ssc-mir-452 precursor miRNA

Literature search

7 open access papers mention ssc-mir-452
(8 sentences)

Sequence

22712 reads, 110.0 reads per million, 166 experiments

aagcacuuacAACUGUUUGCAGAGGAAACUGAgacuuuguaacuacaucUCAGUCUCAACUGCAAAGAAGUAagugcuua
((((((((((...(.(((((((..((.(((((((...(((....)))))))))).))..))))))).).)))))))))).

Structure

-          AAC G       AG  A       cuu   a 
 aagcacuuac   U UUUGCAG  GA ACUGAga   ugu a
 ||||||||||   | |||||||  || |||||||   |||  
 uucgugaAUG   A AAACGUC  CU UGACUcu   aca c
a          --A G       AA  C       ---   u 

Annotation confidence High

Genome context

chrX: 140861113-140861192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-452

Mature ssc-miR-452-5p

• Accession: MIMAT0025374
• Description: Sus scrofa ssc-miR-452-5p mature miRNA
• Sequence: 11 - AACUGUUUGCAGAGGAAACUGA - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-452-3p

• Accession: MIMAT0052689
• Description: Sus scrofa ssc-miR-452-3p mature miRNA
• Sequence: 50 - UCAGUCUCAACUGCAAAGAAGUA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328