Stem-loop ssc-mir-493

Accession

MI0022152

Description

Sus scrofa ssc-mir-493 precursor miRNA

Literature search

3 open access papers mention ssc-mir-493
(8 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

ccccagggccUUGUACAUGGUAGGCUUUCAUUcauucguuugcacaugcggUGAAGGUCUACUGUGUGCCAGGcccugugcca
...((((((((.(((((((((((((((((((.....(((........)))))))))))))))))))))).)))))))).....

Structure

--ccc        U                   Ucauu   uug 
     cagggccU GUACAUGGUAGGCUUUCAU     cgu   c
     |||||||| |||||||||||||||||||     |||    
     gucccGGA CGUGUGUCAUCUGGAAGUg     gcg   a
accgu        C                   -----   uac 

Annotation confidence Not enough data

Genome context

chr7: 132069400-132069482 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-493

Mature ssc-miR-493-5p

• Accession: MIMAT0025377
• Description: Sus scrofa ssc-miR-493-5p mature miRNA
• Sequence: 11 - UUGUACAUGGUAGGCUUUCAUU - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-493-3p

• Accession: MIMAT0025378
• Description: Sus scrofa ssc-miR-493-3p mature miRNA
• Sequence: 52 - UGAAGGUCUACUGUGUGCCAGG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328