Stem-loop ssc-mir-671

Accession

MI0022155

Description

Sus scrofa ssc-mir-671 precursor miRNA

Literature search

5 open access papers mention ssc-mir-671
(6 sentences)

Sequence

11 reads, 13 reads per million, 6 experiments

caggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCuuuuccgggc
..((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).))))))))....

Structure

--ca        A   A      GA           u  ug 
    ggaagagg GGA GCCCUG  GGGGCUGGAGG ga  g
    |||||||| ||| ||||||  ||||||||||| ||  a
    ccuuuuCC CCU CGGGAC  UCUUGGCCUcc uu  u
cggg        A   -      --           u  ug 

Annotation confidence Not enough data

Genome context

chr18: 6286693-6286772 [-]

Mature ssc-miR-671-5p

• Accession: MIMAT0025381
• Description: Sus scrofa ssc-miR-671-5p mature miRNA
• Sequence: 11 - AGGAAGCCCUGGAGGGGCUGGAGG - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-671-3p

• Accession: MIMAT0025382
• Description: Sus scrofa ssc-miR-671-3p mature miRNA
• Sequence: 50 - UCCGGUUCUCAGGGCUCCACC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328