miRBase entry: mdm-MIR167c

Stem-loop mdm-MIR167c


Accession
MI0023028
Description
Malus domestica mdm-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
11 open access papers mention mdm-MIR167c
(204 sentences)

Sequence

uagcaguUGAAGCUGCCAGCAUGAUCUAaacuucccucuuggucaaggaaagaucagaucaugugguagcuucaccuguug
((((((.(((((((((((.((((((((...(((.(((........))).)))...))))))))))))))))))).))))))

Structure
      u           G        Aaa   c   cuu 
uagcag UGAAGCUGCCA CAUGAUCU   cuu ccu   g
|||||| ||||||||||| ||||||||   ||| |||    
guuguc acuucgauggu guacuaga   gaa gga   g
      c           -        cua   a   acu 


Annotation confidence Not enough data
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Genome context
MDC000702.551: 40612-40692 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR167c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR167c

Accession MIMAT0025924
Description Malus domestica mdm-miR167c mature miRNA
Sequence 8 - UGAAGCUGCCAGCAUGAUCUA - 28
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47