Stem-loop mdm-MIR393f

Accession

MI0023167

Description

Malus domestica mdm-MIR393f precursor miRNA

Literature search

6 open access papers mention mdm-MIR393f
(31 sentences)

Sequence

90735 reads, 5591.0 reads per million, 32 experiments

guggaggcuUCCAAAGGGAUCGCAUUGAUCUaauugaucauauaugucaaacaucguccguacagacauggcagguuauauauguaguuggAUCAUGCGAUCCCUUCGGACGuuuccau
((((((((.(((.((((((((((((.((((((((((..((((((((.....(((.(((......))))))......)))))))))))))))))))))))))))))).))).))))))))

Structure

        u   A            U          au        -ucaaa   c   cg 
guggaggc UCC AAGGGAUCGCAU GAUCUaauug  cauauaug      cau guc  u
|||||||| ||| |||||||||||| ||||||||||  ||||||||      ||| |||   
uaccuuuG AGG UUCCCUAGCGUA CUAgguugau  guauauau      gua cag  a
        C   C            -          --        uggacg   -   ac 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR393f-5p

• Accession: MIMAT0056730
• Description: Malus domestica mdm-miR393f-5p mature miRNA
• Sequence: 10 - UCCAAAGGGAUCGCAUUGAUCU - 31
• Evidence: experimental ; unknown

Mature mdm-miR393f-3p

• Accession: MIMAT0026063
• Description: Malus domestica mdm-miR393f-3p mature miRNA
• Sequence: 92 - AUCAUGCGAUCCCUUCGGACG - 112
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47