Stem-loop cme-MIR399d

Accession

MI0023182

Description

Cucumis melo cme-MIR399d precursor miRNA

Sequence

16893 reads, 6085.0 reads per million, 22 experiments

guagaAGGGCUUCUCUCCAUUGGCAGGcauaaugacuuuggcuuucauguucUGCCAAAGGAGAGUUGCCCUUcaucuagu
...(((((((..((((((.((((((((....((((.........))))..)))))))).))))))..))))))).......

Structure

----gua       UU      A        caua    cuu 
       gaAGGGC  CUCUCC UUGGCAGG    auga   u
       |||||||  |||||| ||||||||    ||||   g
       cUUCCCG  GAGAGG AACCGUcu    uacu   g
ugaucua       UU      A        --ug    uuc 

Annotation confidence High

Genome context

Unknown

Mature cme-miR399d-5p

• Accession: MIMAT0057841
• Description: Cucumis melo cme-miR399d-5p mature miRNA
• Sequence: 6 - AGGGCUUCUCUCCAUUGGCAGG - 27
• Evidence: experimental ; unknown

Mature cme-miR399d-3p

• Accession: MIMAT0026078
• Description: Cucumis melo cme-miR399d-3p mature miRNA
• Sequence: 53 - UGCCAAAGGAGAGUUGCCCUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877