Stem-loop cme-MIR162

Accession

MI0023184

Description

Cucumis melo cme-MIR162 precursor miRNA

Sequence

57082 reads, 25232.0 reads per million, 26 experiments

gucaguGGAGGCAGCGGUUCAUCGACCccuucuugcgauuuguacugauucguaucacaaaaacacgaaccggUCGAUAAACCUCUGCAUCCAGcgcucucuc
((...((((.((((.((((.(((((((..(((.((...(((((...(((....))))))))..)).)))..))))))).)))).)))).))))..))......

Structure

------  cag    G    C    C       cc   u  cga     acu   u 
      gu   uGGA GCAG GGUU AUCGACC  uuc ug   uuugu   gau c
      ||   |||| |||| |||| |||||||  ||| ||   |||||   |||  
      cg   ACCU CGUC CCAA UAGCUgg  aag ac   aaaca   cua g
cucucu  -cG    A    U    A       cc   c  -aa     ---   u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR162-5p

• Accession: MIMAT0057842
• Description: Cucumis melo cme-miR162-5p mature miRNA
• Sequence: 7 - GGAGGCAGCGGUUCAUCGACC - 27
• Evidence: experimental ; unknown

Mature cme-miR162-3p

• Accession: MIMAT0026080
• Description: Cucumis melo cme-miR162-3p mature miRNA
• Sequence: 74 - UCGAUAAACCUCUGCAUCCAG - 94
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877