Stem-loop cme-MIR169c

Accession

MI0023185

Description

Cucumis melo cme-MIR169c precursor miRNA

Literature search

1 open access papers mention cme-MIR169c
(1 sentences)

Sequence

cucguuuggUAGCCAAAGAUGACUUGCCUGuaggacguuaucuucuuaauauuaauuuugaguuucuuaaauauagagacucuuaauuaguuauauuacaggcaguugucuugggcuaauuugacaagcucuuuucgaucauguuagauuuuuucuuccuuuuaacuaagaaaguaucaaaaauuucuuauuaagaaagaguuuaagaucaaaagaucagguccauccaaaaaagaaaaguauuguuugauagccaaaaaugacuugccugcuaauucgaugagcaaaagagaucuauuuuuuauuacuuagaacuugaaugagcuucauuuucaggcaaucuuuuuggcuaaucuaacaag
((..((((((((((.(((((((((.((((((((.................(((((((..((((((((.......))))))))..)))))))....))))))))))))))))).)))))....(((..(.((((((.((((...(((((((((((((......(((.(((((((..........))))))))))))))))))))))))))))))))).)..)))...)))))..)).......(((((.((((((((((((.((.(((((((..(((..((.(..((...(((.((((............)))).)))...))..).)))))..)))))))))))))))))).))).))))).

Structure

-------------------------------------------------------------------------------------------------------------------------------  cg     ------------------------------------------------------------------------------------------------------------     A         U        gacguuaucuucuuaau       uu        ua 
                                                                                                                               cu  uuugg                                                                                                            UAGCC AAGAUGACU GCCUGuag                 auuaauu  gaguuucu  a
                                                                                                                               ||  |||||                                                                                                            ||||| ||||||||| ||||||||                 |||||||  ||||||||  a
                                                                                                                               ga  aaacc                                                                                                            aucgg uucuguuga cggacauu                 ugauuaa  cucagaga  u
gaacaaucuaaucgguuuuucuaacggacuuuuacuucgaguaaguucaagauucauuauuuuuuaucuagagaaaacgaguagcuuaaucguccguucaguaaaaaccgauaguuuguuaugaaaa  aa     uaccuggacuagaaaacuagaauuugagaaagaauuauucuuuaaaaacuaugaaagaaucaauuuuccuucuuuuuuagauuguacuagcuuuucucgaacaguuua     g         -        -------------auau       uu        ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR169c

• Accession: MIMAT0026081
• Description: Cucumis melo cme-miR169c mature miRNA
• Sequence: 10 - UAGCCAAAGAUGACUUGCCUG - 30
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877