Stem-loop cme-MIR169c

Accession

MI0023185

Description

Cucumis melo cme-MIR169c precursor miRNA

Literature search

1 open access papers mention cme-MIR169c
(1 sentences)

Sequence

1156 reads, 1238.0 reads per million, 25 experiments

cucguuuggUAGCCAAAGAUGACUUGCCUGuaggacguuaucuucuuaauauuaauuuugaguuucuuaaauauagagacucuuaauuaguuauauuacaggcaguugucuugggcuaauuugacaagcucuuuucgaucauguuagauuuuuucuuccuuuuaacuaagaaaguaucaaaaauuucuuauuaagaaagaguuuaagaucaaaagaucagguccauccaaaaaagaaaaguauuguuugauagccaaaaauGACUUGCCUGCUAAUUCGAUGAGCAaaagagaucuauuuuuuauuacuuagaacuugaaugagcuucauuuucaggcaaucuuuuuggcuaaucuaacaag
((..((((((((((.(((((((((.((((((((.................(((((((..((((((((.......))))))))..)))))))....))))))))))))))))).)))))....(((..(.((((((.((((...(((((((((((((......(((.(((((((..........))))))))))))))))))))))))))))))))).)..)))...)))))..)).......(((((.((((((((((((.((.(((((((..(((..((.(..((...(((.((((............)))).)))...))..).)))))..)))))))))))))))))).))).))))).

Structure

cucguuuggUAGCCAAAGAUGACUUGCCUGuaggacguuaucuucuuaauauuaauuuugaguuucuuaaauauagagacucuuaauuaguuauauuacaggcaguugucuugggcuaauuugacaagcucuuuucgaucauguuagauuuuuucuuccuuuuaacuaagaaaguaucaaaaauuucuuauuaagaaagaguuuaagaucaaaagaucagguccauccaaaaaagaaaagua     u   -         u  C       CU   UC  U AG  aaa   a    uuuuu 
                                                                                                                                                                                                                                                  uuguu gau agccaaaaa GA UUGCCUG  AAU  GA G  CA   gag ucua     u
                                                                                                                                                                                                                                                  ||||| ||| ||||||||| || |||||||  |||  || |  ||   ||| ||||      
                                                                                                                                                                                                                                                  aacaa cua ucgguuuuu cu aacggac  uua  cu c  gu   uuc agau     a
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------g     u   a         -  -       uu   --  u ga  aag   a    ucauu 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR169c-5p

• Accession: MIMAT0026081
• Description: Cucumis melo cme-miR169c-5p mature miRNA
• Sequence: 10 - UAGCCAAAGAUGACUUGCCUG - 30
• Evidence: not_experimental

Mature cme-miR169c-3p

• Accession: MIMAT0057843
• Description: Cucumis melo cme-miR169c-3p mature miRNA
• Sequence: 262 - GACUUGCCUGCUAAUUCGAUGAGCA - 286
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877