Stem-loop cme-MIR164b

Accession

MI0023192

Description

Cucumis melo cme-MIR164b precursor miRNA

Literature search

1 open access papers mention cme-MIR164b
(1 sentences)

Sequence

1821 reads, 835.0 reads per million, 18 experiments

ugagccaugcUGGAGAGGCAGGGCACAUGCUagauuuaccagcaagaugguaaguuuuagCAUGUGCUCUUCUUCUCCAACuuggauuc
.((((((.(.((((((((.((((((((((((((((((((((......))))))).))))))))))))))).)))))))).).))).)))

Structure

u   -   u c        C               -       gc 
 gag cca g UGGAGAGG AGGGCACAUGCUaga uuuacca  a
 ||| ||| | |||||||| ||||||||||||||| |||||||   
 cuu ggu C ACCUCUUC UCUCGUGUACgauuu gaauggu  a
-   a   u A        U               u       ag 

Annotation confidence High

Genome context

Unknown

Mature cme-miR164b-5p

• Accession: MIMAT0026088
• Description: Cucumis melo cme-miR164b-5p mature miRNA
• Sequence: 11 - UGGAGAGGCAGGGCACAUGCU - 31
• Evidence: not_experimental

Mature cme-miR164b-3p

• Accession: MIMAT0057846
• Description: Cucumis melo cme-miR164b-3p mature miRNA
• Sequence: 61 - CAUGUGCUCUUCUUCUCCAAC - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877