Stem-loop cme-MIR164d

Accession

MI0023194

Description

Cucumis melo cme-MIR164d precursor miRNA

Literature search

1 open access papers mention cme-MIR164d
(1 sentences)

Sequence

62727 reads, 28939.0 reads per million, 26 experiments

ccgaucaggaUGGAGAAGCAGGGCACGUGCAuuacucacucauguaacuccacacccacguggcugccuccgaguggguuguuCAUGUGCCCCUCUUCUCCAUCcugaccac
..(.((((((((((((((..(((((((((.((.((((((((..(((...((((......)))).)))....)))))))).)).)))))))))..)))))))))))))).)..

Structure

cc a              CA         C  u        --au   acu    ac 
  g ucaggaUGGAGAAG  GGGCACGUG Au acucacuc    gua   ccac  c
  | ||||||||||||||  ||||||||| || ||||||||    |||   ||||   
  c agucCUACCUCUUC  CCCGUGUAC ug ugggugag    cgu   ggug  c
ca c              UC         u  u        ccuc   --c    ca 

Annotation confidence High

Genome context

Unknown

Mature cme-miR164d-5p

• Accession: MIMAT0026090
• Description: Cucumis melo cme-miR164d-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: not_experimental

Mature cme-miR164d-3p

• Accession: MIMAT0057847
• Description: Cucumis melo cme-miR164d-3p mature miRNA
• Sequence: 84 - CAUGUGCCCCUCUUCUCCAUC - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877