Stem-loop cme-MIR169m

Accession

MI0023196

Description

Cucumis melo cme-MIR169m precursor miRNA

Literature search

1 open access papers mention cme-MIR169m
(1 sentences)

Sequence

641 reads, 403.0 reads per million, 24 experiments

auuguuugaUAGCCAAAAAUGACUUGCCUGCuaauucgaugagcaaaagagaucuaguuuuauuACUUAGAACUUGAAUGAGCUUCAuuuucaggcagucuuuuuggcuaaucuaacaag
.(((((.((((((((((((.((((.(((((..(((..((.(..((...(((.((((((......)).)))).)))...))..).)))))..)))))))))))))))))).))).))))).

Structure

a     u   -         U    U     Cu   uc  u ag  aaa   a    -  uu 
 uuguu gaU AGCCAAAAA GACU GCCUG  aau  ga g  ca   gag ucua gu  u
 ||||| ||| ||||||||| |||| |||||  |||  || |  ||   ||| |||| ||   
 aacaa cua ucgguuuuu cuga cggac  uuA  CU C  GU   UUC AGAU CA  a
g     u   a         -    -     uu   --  U GA  AAG   A    U  uu 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR169m-5p

• Accession: MIMAT0026092
• Description: Cucumis melo cme-miR169m-5p mature miRNA
• Sequence: 10 - UAGCCAAAAAUGACUUGCCUGC - 31
• Evidence: not_experimental

Mature cme-miR169m-3p

• Accession: MIMAT0057849
• Description: Cucumis melo cme-miR169m-3p mature miRNA
• Sequence: 65 - ACUUAGAACUUGAAUGAGCUUCA - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877