Stem-loop cme-MIR169b

Accession

MI0023198

Description

Cucumis melo cme-MIR169b precursor miRNA

Literature search

1 open access papers mention cme-MIR169b
(1 sentences)

Sequence

929 reads, 1043.0 reads per million, 25 experiments

cuuguuucgUAGCCAAAAAUGACUUGCCUGUAGgacauuaucuucuuaauacuaauuuugaguuucuuaaauauugaagagacucuuaauuauuaguuauauuacaggcaguuguuuuaggcuaauuugacaggcucuuuucgaucauguuagauuuuuucuucccuuuuaacuacgaaaauaugaaaaguuucuuaucaagaaagaguuaagaucaaagagagguacaucucgaaaagaaaaguauuguuugaUAGCCAAAAAUGACUUGCCUGcuaauucgauuagcaaaagagaucuaaauuuauuacuuagaacuugaaugagcuucauuuucaggcagucuuuuuggcuaaucuaacaag
((((((...((((((((((.((((.((((((((((........)))))....(((((..(((((((((........)))))))))..)))))((((((..((((((((((((((((((.(((((.((.((((.(((((((((((..((((.....((((((((...((((((((.(.......(((.(((...))).))).....)))))))))...)))))))).)))).)))))))))...))..)))).))))))).)))))))).)))))).))))..)))))).....(((.(((((.........))))).)))((((((...)))))).)))))))))))))))))))....))))))

Structure

      -ucg          U    U     UAGgacauuaucuucuuaauacuaauuuugaguuucuuaaauauugaagagacucuuaauua      au    -      -        a     a  u    -g  ---         uc    uagau        ccc        a gaaaaua   a   u 
cuuguu    UAGCCAAAAA GACU GCCUG                                                              uuaguu  auua caggca guuguuuu ggcua uu gaca  gc   ucuuuucga  augu     uuuuucuu   uuuuaacu c       uga aag  
||||||    |||||||||| |||| |||||                                                              ||||||  |||| |||||| |||||||| ||||| || ||||  ||   |||||||||  ||||     ||||||||   |||||||| |       ||| ||| u
gaacaa    aucgguuuuu cuga cggac                                                              gauuag  uaau GUCCGU CAGUAAAA CCGAU ag uugu  ug   agaaaagcu  uaca     ggagagaa   agaauuga g       acu uuc  
      ucua          -    -     --------------uuuuacuucgaguaaguucaagauucauuauuuaaaucuagagaaaac      cu    c      U        A     -  u    ua  aaa         -c    ----u        acu        - --aaaga   a   u 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR169b-5p

• Accession: MIMAT0057850
• Description: Cucumis melo cme-miR169b-5p mature miRNA
• Sequence: 10 - UAGCCAAAAAUGACUUGCCUGUAG - 33
• Evidence: experimental ; unknown

Mature cme-miR169b-3p

• Accession: MIMAT0026094
• Description: Cucumis melo cme-miR169b-3p mature miRNA
• Sequence: 255 - UAGCCAAAAAUGACUUGCCUG - 275
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877