Stem-loop cme-MIR166c

Accession

MI0023201

Description

Cucumis melo cme-MIR166c precursor miRNA

Literature search

1 open access papers mention cme-MIR166c
(6 sentences)

Sequence

72369 reads, 27541.0 reads per million, 26 experiments

uugaggGGAAUGUUGUCUGGCUCGAGgucacuuuuuucucuaaaauuaauuccaucuuucguuuuaauuucaaacaaauuacuacgaucgacgaauugauucauucgaaacgaagugucgUCGGACCAGGCUUCAUUCCCCccacaaauu
.((.((((((((..((((((.((((.(.((((((((((.....(((((((((..((..((((..((((((.....))))))..))))..)).))))))))).....)))).)))))).).)))).))))))..)))))))).))......

Structure

-----u  a        UU      C    G u      -    ucuaa         ca  uu    uu      c 
      ug ggGGAAUG  GUCUGG UCGA g cacuuu uuuc     aauuaauuc  uc  ucgu  uaauuu a
      || ||||||||  |||||| |||| | |||||| ||||     |||||||||  ||  ||||  |||||| a
      ac CCCCUUAC  CGGACC GGCU c gugaag aaag     uuaguuaag  ag  agca  auuaaa a
uuaaac  c        UU      A    g u      c    cuuac         -c  cu    uc      c 

Annotation confidence High

Genome context

Unknown

Mature cme-miR166c-5p

• Accession: MIMAT0057852
• Description: Cucumis melo cme-miR166c-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAG - 26
• Evidence: experimental ; unknown

Mature cme-miR166c-3p

• Accession: MIMAT0026097
• Description: Cucumis melo cme-miR166c-3p mature miRNA
• Sequence: 121 - UCGGACCAGGCUUCAUUCCCC - 141
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877