Stem-loop cme-MIR169l

Accession

MI0023202

Description

Cucumis melo cme-MIR169l precursor miRNA

Literature search

1 open access papers mention cme-MIR169l
(1 sentences)

Sequence

466 reads, 349.0 reads per million, 24 experiments

uuaaguuggcaAGUUAUCUUUGGCUUACUUCAUAAacuucucucuuuucauguuaggucuuuucuuucgauauuaucuuuaagaaaauguuuaaaauugucgagugauuagguuuaaaaaauuggauguuacuaaaauggaagugauguauaguaugagaaaauaagagcauugugugaUAGCCAAAAAUGACUUGCCUGCaacauagu
....((.((((((((((.(((((((.....(((((..((((...(((((((.((((((((..((.(((((((.....((((((......))))))..))))))).))..))))))))...((((.((((((((........)))))))).)))))))))))....))))..)))))....))))))).)))))))))).))........

Structure

----uuaa  u          C       UACUU     ac    -cuc       ------------------------------------g        uu  u       uuauc      aa 
        gu ggcaAGUUAU UUUGGCU     CAUAA  uucu    uuuucau                                     uuaggucu  uc uucgaua     uuuaag  a
        || |||||||||| |||||||     |||||  ||||    |||||||                                     ||||||||  || |||||||     ||||||   
        CG CCGUUCAGUA AAACCGA     guguu  gaga    aagagua                                     aauuugga  ag gagcugu     aaauuu  a
ugauacaa  U          A       -Uagu     ac    auaa       ugauauguagugaagguaaaaucauuguagguuaaaa        uu  u       ---ua      gu 

Annotation confidence Medium

Genome context

Unknown

Mature cme-miR169l-5p

• Accession: MIMAT0057853
• Description: Cucumis melo cme-miR169l-5p mature miRNA
• Sequence: 12 - AGUUAUCUUUGGCUUACUUCAUAA - 35
• Evidence: experimental ; unknown

Mature cme-miR169l-3p

• Accession: MIMAT0026098
• Description: Cucumis melo cme-miR169l-3p mature miRNA
• Sequence: 180 - UAGCCAAAAAUGACUUGCCUGC - 201
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877