Stem-loop cme-MIR854

Accession

MI0023204

Description

Cucumis melo cme-MIR854 precursor miRNA

Sequence

aaucaguggaGAUGAGGAUAGUGAGGAGGAGgaagacacaggaaugggggaagucgauguugagaaugcagguccugggaucacugaguaaugauuguuguaggaauuuuguaggaacagagaaaaagguuuucacuuuaagagacugacacauacuugaguuauuacaguuggggaaauuaacaugucuguauugugcucucauucuuucucuugauaucaaaugauaaaagcuuaugugguucucuuuucgaguguauuuuugcuauuguccaaaucauuuuccuccuaaagugauuuuguaauggaaauaagucauuuuuuuaaaaaaggaaaucuaaaaucauucuaaaauuuuaaagaaucgcuugguaguugcaaaugcagugguuaaacucaaaguauuugcaaguauagcacaauguacaagagcuugcaaauauaucuuugaguguauuagugagacuauuuuguuaauaagaguauccaauaguuuuuuaugugaagacaccaaaauuggccaucaagaucauuucuuuccucuucagaggcucuucuucucaacaauguagcaucuucagaggacucuuuc
...(..((((((((...(((.((..(((.((((((((....(((.((((((((..(((.((((...(((((((((((.(((((........))))).)...))))..))))))...............((((((((..((((((((((....((((((..((((..((((((((.....))))).)))...(((((((((............(((..((((....)))).))).....((((((((.((((.(((((.(((((..((((((.(.((((((((((......)))))))))).))))))).........((((((((....))))))))..)))))))))).))))......))))))))...(((.((((((((((..(((......)))..)))))))))).)))))))))))).((((((((((((.(((((((......))))))).))))).))..)))))))))..))))))....)))))))))).)))))))).(((....)))...)))).)))....)))))))))))....).))))))))))..)).)))..))))))))..).........

Structure

------aau ag        AGG   G  AG   G       - acag   u        --uc   g    gaaugcagguccugggaucacugaguaaugauuguuguaggaauuuuguaggaacagagaaaaag        uu          acac      ga    -----------------------uuacaguuggggaaauuaacaugucug         ---------cucauucuuucucuugauaucaaaugauaaaagcuuau        -----c    c     u     -----------------------------ug      u c          cc 
         c  uggaGAUG   AUA UG  GAG AGgaaga c    gaa gggggaag    gau uuga                                                                 guuuucac  uaagagacug    auacuu  guua                                                  uauugugcu                                               gugguucu      uuuu gagug auuuu                               cuauug c aaaucauuuu  u
         |  ||||||||   ||| ||  ||| ||||||| |    ||| ||||||||    ||| ||||                                                                 ||||||||  ||||||||||    ||||||  ||||                                                  |||||||||                                               ||||||||      |||| ||||| |||||                               |||||| | ||||||||||   
         g  acuucuac   ugu ac  cuc uucuucu g    cuu cuccuuuc    cua aacu                                                                 cagaagug  auuuuuugau    uaugag  uaau                                                  guaacacga                                               cgcuaaga      aaaa cuuac uaaaa                               gguaau g uuuagugaaa  c
cuuucucag ag        -ga   a  aa   -       c gaga   -        uuua   g    ---------------------------------------------------accgguuaaaacca        -u          aacc      aa    uguuuuaucagagugauuaugugaguuucuauauaaacguucgagaacau         uaugaacguuuaugaaacucaaauuggugacguaaacguugaugguu        aauuuu    u     -     ucuaaaggaaaaaauuuuuuuacugaauaaa      - u          uc 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR854

• Accession: MIMAT0026100
• Description: Cucumis melo cme-miR854 mature miRNA
• Sequence: 11 - GAUGAGGAUAGUGAGGAGGAG - 31
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877