miRBase entry: cme-MIR477b

Stem-loop cme-MIR477b


Accession
MI0023206
Description
Cucumis melo cme-MIR477b precursor miRNA


Sequence

65309 reads, 30167.0 reads per million, 26 experiments
uuccuuuugcuuuCUCUCCCUCAAAGGCUUCUGgcaacaaugacauucgaacguaauuuguuguauucacguaugucUGAGGCCUUAGGGGAGAGUACGugaaag
...(((((((...((((((((..((((((((.((((((..(((......((((.....))))....))).)).)))).)))))))).))))))))...)))))))

Structure
uuc       uuu        CA        U    -  aa   cauucg    u 
   cuuuugc   CUCUCCCU  AAGGCUUC Ggca ac  uga      aacg a
   |||||||   ||||||||  |||||||| |||| ||  |||      |||| a
   gaaaguG   GAGAGGGG  UUCCGGAG cugu ug  acu      uugu u
---       CAU        -A        U    a  -c   --uaug    u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR477b-5p

Accession MIMAT0026102
Description Cucumis melo cme-miR477b-5p mature miRNA
Sequence 14 - CUCUCCCUCAAAGGCUUCUG - 33
Evidence not_experimental

Mature cme-miR477b-3p

Accession MIMAT0057854
Description Cucumis melo cme-miR477b-3p mature miRNA
Sequence 78 - UGAGGCCUUAGGGGAGAGUACG - 99
Evidence experimental
unknown

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877