Stem-loop cme-MIR166b

Accession

MI0023207

Description

Cucumis melo cme-MIR166b precursor miRNA

Literature search

1 open access papers mention cme-MIR166b
(6 sentences)

Sequence

130866 reads, 44732.0 reads per million, 26 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGAcacuuuuauucgaucuuuugauuuuuguguuuauauuuagugucgUCGGACCAGGCUUCAUUCCCCccaauuaau
(((.((((((((..((((((.((((.((((((..(((..((((....))))...))).........)))))).)))).))))))..)))))))).))).....

Structure

-----   a        UU      C    G      -------uu   -uc    u 
     uug ggGGAAUG  GUCUGG UCGA GAcacu         uau   gauc u
     ||| ||||||||  |||||| |||| ||||||         |||   ||||  
     aac CCCCUUAC  CGGACC GGCU cuguga         gug   uuag u
uaauu   c        UU      A    g      uuuauauuu   uuu    u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR166b-5p

• Accession: MIMAT0057855
• Description: Cucumis melo cme-miR166b-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGGA - 28
• Evidence: experimental ; unknown

Mature cme-miR166b-3p

• Accession: MIMAT0026103
• Description: Cucumis melo cme-miR166b-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877