Stem-loop cme-MIR530b

Accession

MI0023208

Description

Cucumis melo cme-MIR530b precursor miRNA

Sequence

8530 reads, 3970.0 reads per million, 23 experiments

uagccuucaccUGCAUUUGCACCUACACCUUcaucuuugauuucuucuaaacaaggccauugAGGUGCAGGUGCUUCUGCAAGugaaugccaucuug
..((.(((((.((((...((((((.((((((.(((((((.((......)).)))))..)).)))))).))))))...)))).))))).)).......

Structure

-----ua  c     c    UUU      A      c  --     a  uc 
       gc uucac UGCA   GCACCU CACCUU au  cuuug uu  u
       || ||||| ||||   |||||| |||||| ||  ||||| ||   
       cg aaguG ACGU   CGUGGA GUGGAg ua  ggaac aa  u
guucuac  u     A    CUU      C      u  cc     a  uc 

Annotation confidence High

Genome context

Unknown

Mature cme-miR530b-5p

• Accession: MIMAT0026104
• Description: Cucumis melo cme-miR530b-5p mature miRNA
• Sequence: 12 - UGCAUUUGCACCUACACCUU - 31
• Evidence: not_experimental

Mature cme-miR530b-3p

• Accession: MIMAT0057856
• Description: Cucumis melo cme-miR530b-3p mature miRNA
• Sequence: 63 - AGGUGCAGGUGCUUCUGCAAG - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877