Stem-loop cme-MIR156i

Accession

MI0023209

Description

Cucumis melo cme-MIR156i precursor miRNA

Literature search

2 open access papers mention cme-MIR156i
(5 sentences)

Sequence

9123 reads, 4187.0 reads per million, 26 experiments

uaugaaaaaagugggaauugagaaaagcagaaaagacccagagagaauugaaagagcUGACAGAAGAGAGUGAGCACacacuaaaccuaauuguaugagaaaauuaaaaaaaaguugaaaguucauaccuuuacuuaguaugUGCUCAUUUCUCUUUCUGUCAGGcccuucuc
...........((((..((.............))..)))).........(((.(..((((((((((((((((((((((.(((((...(((..(((((((....((((.......))))...)))))))..))).))))).)))))))).))))).)))))))))..).)))..

Structure

uaugaaaaaagugggaauugagaaaagcagaaaagacccagagagaauu   a ag         -     -        c     acc   uu       aaaa    aa 
                                                 gaa g  cUGACAGAA GAGAG UGAGCACa acuaa   uaa  guaugag    uuaa  a
                                                 ||| |  ||||||||| ||||| |||||||| |||||   |||  |||||||    ||||  a
                                                 cuu c  GACUGUCUU CUCUU ACUCGUgu ugauu   auu  cauacuu    aguu  a
-----------------------------------------------cu   c cG         U     U        a     --c   uc       -gaa    ga 

Annotation confidence High

Genome context

Unknown

Mature cme-miR156i-5p

• Accession: MIMAT0026105
• Description: Cucumis melo cme-miR156i-5p mature miRNA
• Sequence: 58 - UGACAGAAGAGAGUGAGCAC - 77
• Evidence: not_experimental

Mature cme-miR156i-3p

• Accession: MIMAT0057857
• Description: Cucumis melo cme-miR156i-3p mature miRNA
• Sequence: 143 - UGCUCAUUUCUCUUUCUGUCAGG - 165
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877