Stem-loop cme-MIR396a

Accession

MI0023210

Description

Cucumis melo cme-MIR396a precursor miRNA

Literature search

1 open access papers mention cme-MIR396a
(2 sentences)

Sequence

71204 reads, 40173.0 reads per million, 26 experiments

ggccauguuuUUCCACAGCUUUCUUGAACUUAaaauuucuuuguucauucaccaacuaacuacauaauaucucaauucuaaacaaagcuuugaaGCUCAAGAAAGCUGUGGGAAAucaugaca
...((((.(((((((((((((((((((.(((.(((...(((((((...................................))))))).))).))).))))))))))))))))))).))))...

Structure

ggc    u                   A   A   uuu       cauucaccaacuaacu 
   caug uuUUCCACAGCUUUCUUGA CUU aaa   cuuuguu                a
   |||| ||||||||||||||||||| ||| |||   |||||||                c
   guac AAAGGGUGUCGAAAGAACU Gaa uuu   gaaacaa                a
aca    u                   C   g   --c       aucuuaacucuauaau 

Annotation confidence High

Genome context

Unknown

Mature cme-miR396a-5p

• Accession: MIMAT0026106
• Description: Cucumis melo cme-miR396a-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUUA - 32
• Evidence: not_experimental

Mature cme-miR396a-3p

• Accession: MIMAT0057858
• Description: Cucumis melo cme-miR396a-3p mature miRNA
• Sequence: 95 - GCUCAAGAAAGCUGUGGGAAA - 115
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877