Stem-loop cme-MIR166d

Accession

MI0023211

Description

Cucumis melo cme-MIR166d precursor miRNA

Literature search

1 open access papers mention cme-MIR166d
(6 sentences)

Sequence

228649 reads, 58572.0 reads per million, 26 experiments

uugaggggAAUGUUGUCUGGUGCGAGAUCuuucauuucuuuugaauuuuugauaaacccuucaaauuacaacucuuacuuuugaaugauuUCGGACCAGGCUUCAUUCCCCucaacaaaac
((((((((((((..(((((((.(((((((.((((.............(((((........)))))................)))).))))))).)))))))..))))))))))))......

Structure

------            UU       G       u    ---uuucuuuugaauu     uaa 
      uugaggggAAUG  GUCUGGU CGAGAUC uuca                uuuga   a
      ||||||||||||  ||||||| ||||||| ||||                |||||    
      aacuCCCCUUAC  CGGACCA GCUuuag aagu                aaacu   c
caaaac            UU       G       u    uuucauucucaacauu     ucc 

Annotation confidence Medium

Genome context

Unknown

Mature cme-miR166d-5p

• Accession: MIMAT0057859
• Description: Cucumis melo cme-miR166d-5p mature miRNA
• Sequence: 9 - AAUGUUGUCUGGUGCGAGAUC - 29
• Evidence: experimental ; unknown

Mature cme-miR166d-3p

• Accession: MIMAT0026107
• Description: Cucumis melo cme-miR166d-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCCC - 111
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877