Stem-loop cme-MIR166f

Accession

MI0023213

Description

Cucumis melo cme-MIR166f precursor miRNA

Literature search

1 open access papers mention cme-MIR166f
(6 sentences)

Sequence

130871 reads, 44726.0 reads per million, 26 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGAcacuuguucuuuuucauccacuucuugaauucauuagugucgUCGGACCAGGCUUCAUUCCCCccaauugcc
(((.((((((((..((((((.((((.((((((........((((.........))))......)))))).)))).))))))..)))))))).))).....

Structure

-----   a        UU      C    G      uguucuuu    ucc 
     uug ggGGAAUG  GUCUGG UCGA GAcacu        uuca   a
     ||| ||||||||  |||||| |||| ||||||        ||||   c
     aac CCCCUUAC  CGGACC GGCU cuguga        aagu   u
ccguu   c        UU      A    g      --uuacuu    ucu 

Annotation confidence High

Genome context

Unknown

Mature cme-miR166f-5p

• Accession: MIMAT0057861
• Description: Cucumis melo cme-miR166f-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGGA - 28
• Evidence: experimental ; unknown

Mature cme-miR166f-3p

• Accession: MIMAT0026109
• Description: Cucumis melo cme-miR166f-3p mature miRNA
• Sequence: 71 - UCGGACCAGGCUUCAUUCCCC - 91
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877