Stem-loop cme-MIR166a

Accession

MI0023214

Description

Cucumis melo cme-MIR166a precursor miRNA

Literature search

1 open access papers mention cme-MIR166a
(6 sentences)

Sequence

68408 reads, 29361.0 reads per million, 26 experiments

uugaggGGAAUGCUGUCUGGUUCGAGAccguuuaucugauaucugucauguuuccauggugagaacgaucUCGGACCAGGCUUCAUUCCCCccaacucgaa
(((.((((((((..(((((((((((((.(((((........((..(((((....))))).))))))).)))))))))))))..)))))))).)))......

Structure

------   a        CU             c     aucugaua  ug     u 
      uug ggGGAAUG  GUCUGGUUCGAGA cguuu        uc  ucaug u
      ||| ||||||||  ||||||||||||| |||||        ||  |||||  
      aac CCCCUUAC  CGGACCAGGCUcu gcaag        ag  gguac u
aagcuc   c        UU             a     --------  -u     c 

Annotation confidence High

Genome context

Unknown

Mature cme-miR166a-5p

• Accession: MIMAT0057862
• Description: Cucumis melo cme-miR166a-5p mature miRNA
• Sequence: 7 - GGAAUGCUGUCUGGUUCGAGA - 27
• Evidence: experimental ; unknown

Mature cme-miR166a-3p

• Accession: MIMAT0026110
• Description: Cucumis melo cme-miR166a-3p mature miRNA
• Sequence: 71 - UCGGACCAGGCUUCAUUCCCC - 91
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877