Stem-loop cme-MIR167a

Accession

MI0023216

Description

Cucumis melo cme-MIR167a precursor miRNA

Literature search

1 open access papers mention cme-MIR167a
(1 sentences)

Sequence

895 reads, 661.0 reads per million, 26 experiments

aggaaaaggUGAAGCUGCCAGCAUGAUCUAccucuggucugcuagcuugaaaagacaaaagcguaaagauaaagagauugauucauaccaauuucuuuuuucuugauccuccauugcuaacccuaguuaGGUCAUGCUCUGACAGCCUCACUccuuccua
(((((..(((((.(((((.(((((((((((.((..(((..((..((((..........))))...((((.((((((((((........))))))))))..))))...........))..)))..)).)))))))))))..).)))).)))))..))))).

Structure

-     aa     A    - -C           c  cu   cu  uagcuugaaaagacaaaagcgua    -u          auu 
 aggaa  ggUGA GCUG C  AGCAUGAUCUA cu  ggu  gc                       aaga  aaagagauug   c
 |||||  ||||| |||| |  ||||||||||| ||  |||  ||                       ||||  ||||||||||    
 uccuu  UCACU CGAC G  UCGUACUGGau ga  cca  cg                       uucu  uuucuuuaac   a
a     cc     C    A UC           u  uc   au  ------------uuaccuccuag    uu          cau 

Annotation confidence High

Genome context

Unknown

Mature cme-miR167a-5p

• Accession: MIMAT0026112
• Description: Cucumis melo cme-miR167a-5p mature miRNA
• Sequence: 10 - UGAAGCUGCCAGCAUGAUCUA - 30
• Evidence: not_experimental

Mature cme-miR167a-3p

• Accession: MIMAT0057864
• Description: Cucumis melo cme-miR167a-3p mature miRNA
• Sequence: 130 - GGUCAUGCUCUGACAGCCUCACU - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877