Stem-loop cme-MIR171e

Accession

MI0023222

Description

Cucumis melo cme-MIR171e precursor miRNA

Literature search

1 open access papers mention cme-MIR171e
(1 sentences)

Sequence

183 reads, 132.0 reads per million, 21 experiments

cuaugaUAUUGGUCCGGUUCACUCAGAUcacuacccuaaauugacuaggguuucauuugaaguuuaaauugagucugaUUGAGCCGCGCCAAUAUCucagugcucu
((..(((((((((.(((((((.((((((....((((((.......)))))).(((.((........)).))))))))).))))))).)))))))))..))......

Structure

------  au         C       C      -----------------cacu      aa 
      cu  gaUAUUGGU CGGUUCA UCAGAU                     acccua  u
      ||  ||||||||| ||||||| ||||||                     ||||||  u
      ga  CUAUAACCG GCCGAGU agucug                     ugggau  g
ucucgu  cu         C       U      aguuaaauuugaaguuuacuu      ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR171e-5p

• Accession: MIMAT0057865
• Description: Cucumis melo cme-miR171e-5p mature miRNA
• Sequence: 7 - UAUUGGUCCGGUUCACUCAGAU - 28
• Evidence: experimental ; unknown

Mature cme-miR171e-3p

• Accession: MIMAT0026118
• Description: Cucumis melo cme-miR171e-3p mature miRNA
• Sequence: 79 - UUGAGCCGCGCCAAUAUC - 96
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877