Stem-loop cme-MIR172d

Accession

MI0023231

Description

Cucumis melo cme-MIR172d precursor miRNA

Sequence

159 reads, 258.0 reads per million, 24 experiments

guuggugCAGCACCAUCAAGAUUCACAAAGgcuuuaauuauuauuuacguuuaaauucucuuuccuuaauuuuauucaaauuuaaaaaagaaaagaaagaaaaaagaaaaaagccuuuuccuuugGGAAUCUUGAUGAUGCUGCAUcgucaaauac
(.((((((((((.(((((((((((.((((((...........................((((((.((..(((((........)))))..))...)))))).(((((........))))))))))).))))))))))).)))))))))).)......

Structure

------ u          C           A      cuuuaauuauuauuuacguuuaaauuc      --c  aa     uuc 
      g uggugCAGCA CAUCAAGAUUC CAAAGg                           ucuuuc   uu  uuuua   a
      | |||||||||| ||||||||||| ||||||                           ||||||   ||  |||||    
      c gcUACGUCGU GUAGUUCUAAG guuucc                           agaaag   ag  aaaau   a
cauaaa u          A           G      --------uuuuccgaaaaaagaaaaa      aaa  aa     uua 

Annotation confidence Medium

Genome context

Unknown

Mature cme-miR172d-5p

• Accession: MIMAT0057868
• Description: Cucumis melo cme-miR172d-5p mature miRNA
• Sequence: 8 - CAGCACCAUCAAGAUUCACAAAG - 30
• Evidence: experimental ; unknown

Mature cme-miR172d-3p

• Accession: MIMAT0026127
• Description: Cucumis melo cme-miR172d-3p mature miRNA
• Sequence: 126 - GGAAUCUUGAUGAUGCUGCAU - 146
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877