Stem-loop cme-MIR319c

Accession

MI0023234

Description

Cucumis melo cme-MIR319c precursor miRNA

Literature search

2 open access papers mention cme-MIR319c
(3 sentences)

Sequence

18934 reads, 25885.0 reads per million, 26 experiments

gagagagagcuuccuucaguccacucauagagggauucaaagggguugcugaaguAACUGCCGACUCAUUCACUCaaacacucaguagaacucaaaaagaaauuauccaagaaaaagaaaagaaaauuugguucaaaguauauucuuuuccucuauugugauugugugaaugaagcgggagauauuuugcacucucucuuauucuuugcUUGGACUGAAGGGAGCUCCUccuuuuuacuu
..(((.(((((((((((((((((......(((((((....(((((.(((.((((((.((.(((..((((((((.(((.(((..((((((..((.....))................((((((((.((((......))))...)))))))).))))))))).))).))))))))..))).)).))))))))).)))))...)))))))...))))))))))))))))))))..........

Structure

--------ga   a                 cucaua       ucaa     u   u      A  G   AC        U   a   uc      acucaaaaagaaauuauccaagaaaaa        --a    gg 
          gag gagcuuccuucagucca      gagggau    agggg ugc gaaguA CU CCG  UCAUUCAC Caa cac  aguaga                           gaaaagaa   auuu  u
          ||| |||||||||||||||||      |||||||    ||||| ||| |||||| || |||  |||||||| ||| |||  ||||||                           ||||||||   ||||   
          cUC CUCGAGGGAAGUCAGGU      uuucuua    ucucu acg uuuuau ga ggc  aguaagug guu gug  uuaucu                           cuuuucuu   ugaa  u
uucauuuuuc   -                 ---Ucg       -uuc     c   -      a  g   ga        u   a   --      --------------------------c        aua    ac 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR319c-5p

• Accession: MIMAT0057871
• Description: Cucumis melo cme-miR319c-5p mature miRNA
• Sequence: 56 - AACUGCCGACUCAUUCACUC - 75
• Evidence: experimental ; unknown

Mature cme-miR319c-3p

• Accession: MIMAT0026130
• Description: Cucumis melo cme-miR319c-3p mature miRNA
• Sequence: 210 - UUGGACUGAAGGGAGCUCCU - 229
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877