Stem-loop cme-MIR156b

Accession

MI0023235

Description

Cucumis melo cme-MIR156b precursor miRNA

Literature search

2 open access papers mention cme-MIR156b
(5 sentences)

Sequence

1477 reads, 749.0 reads per million, 24 experiments

uauauguugUUGACAGAAGAUAGAGAGCACagaugaugauaugcaaaaauuucaucaaucauuauuauuaauaucauucuuuguuuuuuaggguuuagaacuuuagagagagacauuauuauccuuaucacuaugcauuucacuccauuuguGCUCUCUAUGCUUCUGUCAUCAcucucuuc
.......((.(((((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...(((((((((((...)))))))))))))))....................))))).)))...)))))))))))))))).))))))))).))........

Structure

-uauaugu  U         -                --a   u     aaaauuucaucaaucauuauuauuaauaucau    ugu           u 
        ug UGACAGAAG AUAGAGAGCACagaug   uga augca                                ucuu   uuuuuaggguu  
        || ||||||||| ||||||||||||||||   ||| |||||                                ||||   ||||||||||| a
        AC ACUGUCUUC UAUCUCUCGuguuuac   acu uacgu                                agag   agagauuucaa  
cuucucuc  U         G                cuc   u     ------------aucacuauuccuauuauuac    ---           g 

Annotation confidence High

Genome context

Unknown

Mature cme-miR156b-5p

• Accession: MIMAT0026131
• Description: Cucumis melo cme-miR156b-5p mature miRNA
• Sequence: 10 - UUGACAGAAGAUAGAGAGCAC - 30
• Evidence: not_experimental

Mature cme-miR156b-3p

• Accession: MIMAT0057872
• Description: Cucumis melo cme-miR156b-3p mature miRNA
• Sequence: 153 - GCUCUCUAUGCUUCUGUCAUCA - 174
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877