Stem-loop cme-MIR156b

Accession

MI0023235

Description

Cucumis melo cme-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

2 open access papers mention cme-MIR156b
(4 sentences)

Sequence

uauauguugUUGACAGAAGAUAGAGAGCACagaugaugauaugcaaaaauuucaucaaucauuauuauuaauaucauucuuuguuuuuuaggguuuagaacuuuagagagagacauuauuauccuuaucacuaugcauuucacuccauuugugcucucuaugcuucugucaucacucucuuc
.......((.(((((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...(((((((((((...)))))))))))))))....................))))).)))...)))))))))))))))).))))))))).))........

Structure

-uauaugu  U         -                --a   u     aaaauuucaucaaucauuauuauuaauaucau    ugu           u 
        ug UGACAGAAG AUAGAGAGCACagaug   uga augca                                ucuu   uuuuuaggguu  
        || ||||||||| ||||||||||||||||   ||| |||||                                ||||   ||||||||||| a
        ac acugucuuc uaucucucguguuuac   acu uacgu                                agag   agagauuucaa  
cuucucuc  u         g                cuc   u     ------------aucacuauuccuauuauuac    ---           g 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR156b

• Accession: MIMAT0026131
• Description: Cucumis melo cme-miR156b mature miRNA
• Sequence: 10 - UUGACAGAAGAUAGAGAGCAC - 30
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877