Stem-loop cme-MIR319d

Accession

MI0023236

Description

Cucumis melo cme-MIR319d precursor miRNA

Literature search

2 open access papers mention cme-MIR319d
(3 sentences)

Sequence

18404 reads, 34696.0 reads per million, 26 experiments

auguaggagcucucuucgguucaucucgagacagguggaaggucgaaacguUGCUGCUCAUUCGUUAGUUCaauagcucauuauccaucaaaucuccauaauuuuuauaucaaaguugugugaugugcuccugaucuaacgauguaggagcaaucuuugaucaucguugucauguaUUGGACUGAAGGGAGCUCCUucacuuuuacu
.((.(((((((((((((((((((...((.(((((...((.(((((((..((((((.(((((.((((((.(((..(((.(((((.............(((((((((......)))))))))))))).)))..))).))))))))).)).)))))).))))))).)).))))).))...))))))))))))))))))).))........

Structure

-------a  u                   ucu  a     gug  a       ac      G  -   U      U   au   u     uccaucaaaucuc         ua 
        ug aggagcucucuucgguuca   cg gacag   ga ggucgaa  guUGCU CU CAU CGUUAG UCa  agc cauua             cauaauuuu  u
        || |||||||||||||||||||   || |||||   || |||||||  |||||| || ||| |||||| |||  ||| |||||             |||||||||   
        ac UCCUCGAGGGAAGUCAGGU   gu cuguu   cu cuaguuu  uaacga ga gua gcaauc agu  ucg guagu             guguugaaa  a
ucauuuuc  u                   Uau  a     --g  a       -c      g  u   -      u   cc   u     -------------         cu 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR319d-5p

• Accession: MIMAT0057873
• Description: Cucumis melo cme-miR319d-5p mature miRNA
• Sequence: 52 - UGCUGCUCAUUCGUUAGUUC - 71
• Evidence: experimental ; unknown

Mature cme-miR319d-3p

• Accession: MIMAT0026132
• Description: Cucumis melo cme-miR319d-3p mature miRNA
• Sequence: 177 - UUGGACUGAAGGGAGCUCCU - 196
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877