Stem-loop cme-MIR390d

Accession

MI0023237

Description

Cucumis melo cme-MIR390d precursor miRNA

Literature search

1 open access papers mention cme-MIR390d
(7 sentences)

Sequence

326 reads, 228.0 reads per million, 21 experiments

gaguccguuAAGCUCAGGAGGGAUAGCGCCgcguccuccguucgaaucagcucccccgacaucaugaucuuauuauuucuuggCGCUAUCCAUCCUGAGUUUCccggcuucu
(((.(((..((((((((((.(((((((((((.(......((..((.(((...............)))))..)).....).))))))))))).))))))))))..))).))).

Structure

-   u   uu          G           c uccucc  uc  a   gcuccc 
 gag ccg  AAGCUCAGGA GGAUAGCGCCg g      gu  ga uca      c
 ||| |||  |||||||||| ||||||||||| |      ||  || |||      c
 cuu ggc  UUUGAGUCCU CCUAUCGCggu c      ua  cu agu      g
u   c   cC          A           u -uuuau  uu  -   acuaca 

Annotation confidence High

Genome context

Unknown

Mature cme-miR390d-5p

• Accession: MIMAT0026133
• Description: Cucumis melo cme-miR390d-5p mature miRNA
• Sequence: 10 - AAGCUCAGGAGGGAUAGCGCC - 30
• Evidence: not_experimental

Mature cme-miR390d-3p

• Accession: MIMAT0057874
• Description: Cucumis melo cme-miR390d-3p mature miRNA
• Sequence: 84 - CGCUAUCCAUCCUGAGUUUC - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877