Stem-loop cme-MIR390a

Accession

MI0023238

Description

Cucumis melo cme-MIR390a precursor miRNA

Literature search

1 open access papers mention cme-MIR390a
(7 sentences)

Sequence

1398 reads, 732.0 reads per million, 22 experiments

agaaucuguaAAGCUCAGGAGGGAUAGCGCCaccaaauauaagaaagauuacccgaauauauucauuuucgucgcccugcuuuccggCGCUAUCUAUCCUGAGUUUCAuggcuucu
((((.((((.((((((((((.((((((((((...........(((((......((((..........))))........))))).)))))))))).)))))))))).)))).))))

Structure

    u    a          G          accaaauauaa     --auuacc    uaua 
agaa cugu AAGCUCAGGA GGAUAGCGCC           gaaag        cgaa    u
|||| |||| |||||||||| ||||||||||           |||||        ||||     
ucuu gguA UUUGAGUCCU UCUAUCGCgg           cuuuc        gcuu    u
    c    C          A          ----------c     gucccgcu    uuac 

Annotation confidence High

Genome context

Unknown

Mature cme-miR390a-5p

• Accession: MIMAT0026134
• Description: Cucumis melo cme-miR390a-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature cme-miR390a-3p

• Accession: MIMAT0057875
• Description: Cucumis melo cme-miR390a-3p mature miRNA
• Sequence: 88 - CGCUAUCUAUCCUGAGUUUCA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877