Stem-loop cme-MIR390c

Accession

MI0023239

Description

Cucumis melo cme-MIR390c precursor miRNA

Literature search

1 open access papers mention cme-MIR390c
(7 sentences)

Sequence

348 reads, 244.0 reads per million, 20 experiments

gaauccucugAAGCUCAGGAGGGAUAGCGCCguugguugacggcgguuccgucuccggguuggcgauuucucuaucgcggCGCUAUCCAUCCUGAGUUUCAcugguucu
(((.((..((((((((((((.((((((((((.((((..(((((.....))))).))))....(((((......))))))))))))))).))))))))))))..))))).

Structure

-   u  uc            G          -------------------g    uu     c 
 gaa cc  ugAAGCUCAGGA GGAUAGCGCC                    uugg  gacgg g
 ||| ||  |||||||||||| ||||||||||                    ||||  ||||| g
 cuu gg  ACUUUGAGUCCU CCUAUCGCgg                    ggcc  cugcc u
u   -  uc            A          cgcuaucucuuuagcgguug    -u     u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR390c-5p

• Accession: MIMAT0026135
• Description: Cucumis melo cme-miR390c-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature cme-miR390c-3p

• Accession: MIMAT0057876
• Description: Cucumis melo cme-miR390c-3p mature miRNA
• Sequence: 81 - CGCUAUCCAUCCUGAGUUUCA - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877