Stem-loop cme-MIR393a

Accession

MI0023240

Description

Cucumis melo cme-MIR393a precursor miRNA

Sequence

2020 reads, 1203.0 reads per million, 26 experiments

gaggaagcaUCCAAAGGGAUCGCAUUGAUCccaacuuauauauuuacaguuuucuuuucauuuucuuucuucuacauaauuuuggaUCAUGCUAUCCCUUCGGAUUccuccuuu
(((((...((((.(((((((.((((.(((((.((.((((....................................)))).)).))))))))).))))))).)))))))))....

Structure

----     agc    A       C    U     c  c    auauuuacaguuuucuu 
    gagga   aUCC AAGGGAU GCAU GAUCc aa uuau                 u
    |||||   |||| ||||||| |||| ||||| || ||||                  
    cuccU   UAGG UUCCCUA CGUA CUagg uu aaua                 u
uuuc     ---    C       U    -     u  u    caucuucuuucuuuuac 

Annotation confidence High

Genome context

Unknown

Mature cme-miR393a-5p

• Accession: MIMAT0026136
• Description: Cucumis melo cme-miR393a-5p mature miRNA
• Sequence: 10 - UCCAAAGGGAUCGCAUUGAUC - 30
• Evidence: not_experimental

Mature cme-miR393a-3p

• Accession: MIMAT0057877
• Description: Cucumis melo cme-miR393a-3p mature miRNA
• Sequence: 87 - UCAUGCUAUCCCUUCGGAUU - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877