Stem-loop cme-MIR393b

Accession

MI0023241

Description

Cucumis melo cme-MIR393b precursor miRNA

Sequence

2104 reads, 1307.0 reads per million, 26 experiments

caggaagcaUCCAAAGGGAUCGCAUUGAUCccacuuuguagcaauuuuuucuguuucuuuuucuuuuuuuuuaccuuuucauguuuucuuuuuuacccucuucugcuauggaauuUGGAUCAUGCCAUCUCUUUGGAUUccuccugc
(((((.(.((((((((((((.((((.(((((...(((((((((............................................................)))))))))....))))))))).)))))))))))).).))))).

Structure

-     a c            C    U     -cac         auuuuuucuguuucuuuuucuuuuuuuuu 
 cagga g aUCCAAAGGGAU GCAU GAUCc    uuuguagca                             a
 ||||| | |||||||||||| |||| |||||    |||||||||                              
 guccu c UAGGUUUCUCUA CGUA CUAGG    agguaucgu                             c
c     c U            C    -     Uuua         cuucucccauuuuuucuuuuguacuuuuc 

Annotation confidence High

Genome context

Unknown

Mature cme-miR393b-5p

• Accession: MIMAT0026137
• Description: Cucumis melo cme-miR393b-5p mature miRNA
• Sequence: 10 - UCCAAAGGGAUCGCAUUGAUC - 30
• Evidence: not_experimental

Mature cme-miR393b-3p

• Accession: MIMAT0057878
• Description: Cucumis melo cme-miR393b-3p mature miRNA
• Sequence: 116 - UGGAUCAUGCCAUCUCUUUGGAUU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877