Stem-loop cme-MIR393c

Accession

MI0023242

Description

Cucumis melo cme-MIR393c precursor miRNA

Sequence

33653 reads, 12497.0 reads per million, 26 experiments

gguggagaguUCCAAAGGGAUCGCAUUGAUCcaauguucgucuugucuuauuggugauguuggagugaucaauucccaaucgauuauuggAUCGUGCGAUCCCUUAGGAAUcuuccauc
(((((((.(((((.((((((((((((.(((((((((.(((..(((....((((((.((......)).))))))...))).))).))))))))))))))))))))).))))).)))))))

Structure

       a     A            U         u   uc   ucuu      g  gu 
gguggag guUCC AAGGGAUCGCAU GAUCcaaug ucg  uug    auuggu au  u
||||||| ||||| |||||||||||| ||||||||| |||  |||    |||||| ||   
cuaccuu UAAGG UUCCCUAGCGUG CUAgguuau agc  aac    uaacua ug  g
       c     A            -         u   -u   -ccu      g  ag 

Annotation confidence High

Genome context

Unknown

Mature cme-miR393c-5p

• Accession: MIMAT0026138
• Description: Cucumis melo cme-miR393c-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: not_experimental

Mature cme-miR393c-3p

• Accession: MIMAT0057879
• Description: Cucumis melo cme-miR393c-3p mature miRNA
• Sequence: 91 - AUCGUGCGAUCCCUUAGGAAU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877