Stem-loop cme-MIR395d

Accession

MI0023247

Description

Cucumis melo cme-MIR395d precursor miRNA

Sequence

1967 reads, 1064.0 reads per million, 26 experiments

ccuagaGUUCCCUUCCAAGCACUUCAGCugaaaaugucaagaaauuauugauguuucuuuaCUGAAGUGUUUGGGGGAACUCucggcguaa
((.(((((((((..(((((((((((((.((((((((((((.......))))))))..)))))))))))))))))))))))))).)).....

Structure

-----  u         UU             C    --        ga 
     cc agaGUUCCC  CCAAGCACUUCAG ugaa  aaugucaa  a
     || |||||||||  ||||||||||||| ||||  ||||||||  a
     gg uCUCAAGGG  GGUUUGUGAAGUC auuu  uuguaguu  u
aaugc  c         --             -    cu        au 

Annotation confidence High

Genome context

Unknown

Mature cme-miR395d-5p

• Accession: MIMAT0057882
• Description: Cucumis melo cme-miR395d-5p mature miRNA
• Sequence: 7 - GUUCCCUUCCAAGCACUUCAGC - 28
• Evidence: experimental ; unknown

Mature cme-miR395d-3p

• Accession: MIMAT0026143
• Description: Cucumis melo cme-miR395d-3p mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877