Stem-loop cme-MIR396b

Accession

MI0023249

Description

Cucumis melo cme-MIR396b precursor miRNA

Literature search

1 open access papers mention cme-MIR396b
(1 sentences)

Sequence

350462 reads, 126376.0 reads per million, 26 experiments

uuuguauucUUCCACAGCUUUCUUGAACUGcaucccuuccugaacucaauucgcucuuaauuuccccuuucucgaucucucgaucgaucucaaagcguuuuuuguucaucgauuuuguugcgGUUCAAUAAAGCUGUGGGAAGAuacaguc
.(((((((.((((((((((((.((((((((((.....((.(((((..((..((((................((((((....))))))......))))..))..)))))..))......)))))))))).)))))))))))).)))))))..

Structure

-u       c            C          -ucccu  -c     uc  uu    cuuaauuuccccuuuc      u 
  uuguauu UUCCACAGCUUU UUGAACUGca      uc  ugaac  aa  cgcu                ucgauc c
  ||||||| |||||||||||| ||||||||||      ||  |||||  ||  ||||                ||||||  
  gacauAG AGGGUGUCGAAA AACUUGgcgu      ag  acuug  uu  gcga                agcuag u
cu       A            U          uguuuu  cu     uu  uu    ----------aacucu      c 

Annotation confidence High

Genome context

Unknown

Mature cme-miR396b-5p

• Accession: MIMAT0026145
• Description: Cucumis melo cme-miR396b-5p mature miRNA
• Sequence: 10 - UUCCACAGCUUUCUUGAACUG - 30
• Evidence: not_experimental

Mature cme-miR396b-3p

• Accession: MIMAT0057884
• Description: Cucumis melo cme-miR396b-3p mature miRNA
• Sequence: 123 - GUUCAAUAAAGCUGUGGGAAGA - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877