Stem-loop cme-MIR396c

Accession

MI0023250

Description

Cucumis melo cme-MIR396c precursor miRNA

Sequence

45326 reads, 29978.0 reads per million, 26 experiments

ggccauguuuUUCCACAGCUUUCUUGAACUUcuucccauucucaccaacaaauuacaauaaucucaaauuguaauuuuuguaacauacuucgaauaaGCUCAAGAUAGCUGUGGGAAAucauguca
(((.(((.((((((((((((.((((((.(((.(((..........(((.((((((((((........)))))))))))))...........))).))).)))))).)))))))))))).)))))).

Structure

-   c   u            U      A   c   -ccauucucac   c          aau 
 ggc aug uuUUCCACAGCU UCUUGA CUU uuc           caa aaauuacaau   c
 ||| ||| |||||||||||| |||||| ||| |||           ||| ||||||||||    
 cug uac AAAGGGUGUCGA AGAACU Gaa aag           guu uuuaauguua   u
a   -   u            U      C   u   cuucauacaau   -          aac 

Annotation confidence High

Genome context

Unknown

Mature cme-miR396c-5p

• Accession: MIMAT0026146
• Description: Cucumis melo cme-miR396c-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUU - 31
• Evidence: not_experimental

Mature cme-miR396c-3p

• Accession: MIMAT0057885
• Description: Cucumis melo cme-miR396c-3p mature miRNA
• Sequence: 98 - GCUCAAGAUAGCUGUGGGAAA - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877