Stem-loop cme-MIR396d

Accession

MI0023251

Description

Cucumis melo cme-MIR396d precursor miRNA

Sequence

50482 reads, 33762.0 reads per million, 26 experiments

gccaugcuuUUCCACAGCUUUCUUGAACUUUcucugcucuucccuucuucucacaaucaauuuuguaaguaaaaucucucuuagauuuuacccaaaaguuaaauuuaaaaaaaaaaaaaaagaaacuuuggaaGUUCAAGAAAGCUGUGGGAGAAcauggca
((((((.(((((((((((((((((((((((((....................((((......))))..(((((((((.....)))))))))...((((((.......................))))))))))))))))))))))))))))))).)))))).

Structure

-      c                         --ucugcucuucccuucuucucacaaucaauuuuguaa         c 
 gccaug uuUUCCACAGCUUUCUUGAACUUUc                                      guaaaaucu u
 |||||| |||||||||||||||||||||||||                                      ||||||||| c
 cgguac AGAGGGUGUCGAAAGAACUUGaagg                                      cauuuuaga u
a      A                         uuucaaagaaaaaaaaaaaaaaauuuaaauugaaaacc         u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR396d-5p

• Accession: MIMAT0026147
• Description: Cucumis melo cme-miR396d-5p mature miRNA
• Sequence: 10 - UUCCACAGCUUUCUUGAACUUU - 31
• Evidence: not_experimental

Mature cme-miR396d-3p

• Accession: MIMAT0057886
• Description: Cucumis melo cme-miR396d-3p mature miRNA
• Sequence: 134 - GUUCAAGAAAGCUGUGGGAGAA - 155
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877