Stem-loop cme-MIR398b

Accession

MI0023253

Description

Cucumis melo cme-MIR398b precursor miRNA

Sequence

247 reads, 175.0 reads per million, 18 experiments

cccaaaggagugaacccgagaacacaagauugcauuugagauuugcccaAUUGAUUGAUUUUUGUUUguugggaggauuaauucaacauauugcucuuUGUGUUCUCAGGUCACCCCUuuggagacac
.(((((((.((((.((.(((((((((((...(((.(((((((((.((((((.(((........))).)))))).)))))...)))).....)))..))))))))))).)))))).)))))))......

Structure

-----c       a    a  c           auu   ----u    ---     g      U   UGA 
      ccaaagg guga cc gagaacacaag   gca     uuga   gauuu cccaAU GAU   U
      ||||||| |||| || |||||||||||   |||     ||||   ||||| |||||| |||    
      gguuUCC CACU GG CUCUUGUGUuu   cgu     aacu   uuagg ggguug UUG   U
cacaga       C    -  A           -cu   uauac    uaa     a      U   UUU 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR398b-5p

• Accession: MIMAT0057887
• Description: Cucumis melo cme-miR398b-5p mature miRNA
• Sequence: 50 - AUUGAUUGAUUUUUGUUU - 67
• Evidence: experimental ; unknown

Mature cme-miR398b-3p

• Accession: MIMAT0026149
• Description: Cucumis melo cme-miR398b-3p mature miRNA
• Sequence: 99 - UGUGUUCUCAGGUCACCCCU - 118
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877