Stem-loop cme-MIR171c

Accession

MI0023258

Description

Cucumis melo cme-MIR171c precursor miRNA

Literature search

1 open access papers mention cme-MIR171c
(1 sentences)

Sequence

104 reads, 59.0 reads per million, 18 experiments

gucugaUGUUGGAACGGUUCAAUCAAAucaaaucuccuaugaauugggucuuuuaauuUGAUUGAGCCGUGCCAAUAUCgacgauuga
(((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))))))......

Structure

------   u        A               c   ucu    u 
      guc gaUGUUGG ACGGUUCAAUCAAAu aaa   ccua g
      ||| |||||||| ||||||||||||||| |||   |||| a
      cag CUAUAACC UGCCGAGUUAGUuua uuu   gggu a
aguuag   -        G               a   ucu    u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR171c-5p

• Accession: MIMAT0057889
• Description: Cucumis melo cme-miR171c-5p mature miRNA
• Sequence: 7 - UGUUGGAACGGUUCAAUCAAA - 27
• Evidence: experimental ; unknown

Mature cme-miR171c-3p

• Accession: MIMAT0026154
• Description: Cucumis melo cme-miR171c-3p mature miRNA
• Sequence: 59 - UGAUUGAGCCGUGCCAAUAUC - 79
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877