Stem-loop cme-MIR2111a

Accession

MI0023259

Description

Cucumis melo cme-MIR2111a precursor miRNA

Literature search

1 open access papers mention cme-MIR2111a
(1 sentences)

Sequence

2420 reads, 2205.0 reads per million, 26 experiments

aggauaaggUAAUCUGCAUCCUGAGGUUUAgaucagaauaaugaauuuuaaaaaauggcuuuucuuuucuaGCCCUCGGGUCGCAGAUUACCucuuccuu
((((..(((((((((((..(((((((.(((((..((((......((((....)))).....))))..))))).)))))))..)))))))))))..)))).

Structure

-    ua           AU       U     uc    uaauga    u 
 agga  aggUAAUCUGC  CCUGAGG UUAga  agaa      auuu a
 ||||  |||||||||||  ||||||| |||||  ||||      ||||  
 uccu  uCCAUUAGACG  GGGCUCC Gaucu  ucuu      uaaa a
u    uc           CU       C     uu    -uucgg    a 

Annotation confidence High

Genome context

Unknown

Mature cme-miR2111a-5p

• Accession: MIMAT0026155
• Description: Cucumis melo cme-miR2111a-5p mature miRNA
• Sequence: 10 - UAAUCUGCAUCCUGAGGUUUA - 30
• Evidence: not_experimental

Mature cme-miR2111a-3p

• Accession: MIMAT0057890
• Description: Cucumis melo cme-miR2111a-3p mature miRNA
• Sequence: 72 - GCCCUCGGGUCGCAGAUUACC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877