Stem-loop cme-MIR156e

Accession

MI0023260

Description

Cucumis melo cme-MIR156e precursor miRNA

Literature search

2 open access papers mention cme-MIR156e
(5 sentences)

Sequence

527 reads, 246.0 reads per million, 22 experiments

accuauguugUUGACAGAAGAUAGAGGGCACagacgaugaaaugcauauuuggugcaucucaauCUUUUGUGCUCUCUAUACUUCUGUcaucaccuuuuca
........((.(((((((((((((((((((((((.(((((.((((((.....)))))).)).))).)))))))))))))).))))))))).))........

Structure

accuaugu  U         -              c   -  a      a 
        ug UGACAGAAG AUAGAGGGCACaga gau ga augcau u
        || ||||||||| |||||||||||||| ||| || |||||| u
        ac acUGUCUUC UAUCUCUCGUGUUU Cua cu uacgug u
acuuuucc  u         A              U   a  c      g 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR156e-5p

• Accession: MIMAT0026156
• Description: Cucumis melo cme-miR156e-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGGGCAC - 31
• Evidence: not_experimental

Mature cme-miR156e-3p

• Accession: MIMAT0057891
• Description: Cucumis melo cme-miR156e-3p mature miRNA
• Sequence: 65 - CUUUUGUGCUCUCUAUACUUCUGU - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877