Stem-loop cme-MIR156h

Accession

MI0023262

Description

Cucumis melo cme-MIR156h precursor miRNA

Literature search

2 open access papers mention cme-MIR156h
(5 sentences)

Sequence

736 reads, 604.0 reads per million, 23 experiments

auuagggggUGACAGAAGAGAGGGAGCACacauaguuguuuucuugcauaugcaaaauauaauguuguguugauuaauucuccauaaaugauauauuaaugcuugaagcuuuguguGCUCUCUAUCUCUCUGUCACCccucuaac
.(((((((((((((((.(((((((((((((((.(((....(((..((((......((((((...(((((..((.....))..)))))....)))))).))))..)))))).)))))))))))..))))))))))))))).)))).

Structure

a    -           A    --           u   uguu   uu    augcaa      -aug     uu  u 
 uuag ggggUGACAGA GAGA  GGGAGCACaca agu    uuc  gcau      aauaua    uugug  ga u
 |||| ||||||||||| ||||  ||||||||||| |||    |||  ||||      ||||||    |||||  || a
 aauc ccCCACUGUCU CUCU  CUCUCGugugu ucg    aag  cgua      uuauau    aauac  cu a
c    u           -    AU           u   ----   uu    -----a      agua     cu  u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR156h-5p

• Accession: MIMAT0026158
• Description: Cucumis melo cme-miR156h-5p mature miRNA
• Sequence: 10 - UGACAGAAGAGAGGGAGCAC - 29
• Evidence: not_experimental

Mature cme-miR156h-3p

• Accession: MIMAT0057893
• Description: Cucumis melo cme-miR156h-3p mature miRNA
• Sequence: 117 - GCUCUCUAUCUCUCUGUCACC - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877