Stem-loop cme-MIR159a

Accession

MI0023264

Description

Cucumis melo cme-MIR159a precursor miRNA

Literature search

1 open access papers mention cme-MIR159a
(5 sentences)

Sequence

352761 reads, 174215.0 reads per million, 26 experiments

gaggcaGAGCUCCUUGAAGUCCAAUAgagguuuaugccagguugauugagcugcuaagcuauggaucccacagccccuauugcuauauccaucauguuguuguauaauaucuuuaaagcugauaggccuguggcuugcauaucucaggagcuucaucaccuguuucuguuagauccuugUUUGGAUUGAAGGGAGCUCUAcaucuucucu
((((.((((((((((..(((((((..((((((((.(((((((.(((.(((((.((.((.((((.(..((((((..(((((((((.((......(((((((...)))))))...)).))).)))))).))))))..).)))).)).)).))))).)))))))).....)))))).))))..)))))))..))))))))))....))))...

Structure

---    ---c          GA       UA    -    u  -----     u   u     g  a  c    g uc      cc      -   a  uccauc       u 
   gagg    aGAGCUCCUU  AGUCCAA  gagg uuua gc     caggu gau gagcu cu ag uaug a  ccacag  ccuauu gcu ua      auguugu  
   ||||    ||||||||||  |||||||  |||| |||| ||     ||||| ||| ||||| || || |||| |  ||||||  |||||| ||| ||      ||||||| g
   cuuc    UCUCGAGGGA  UUAGGUU  uucc agau ug     gucca cua uucga ga uc auac u  gguguc  ggauag cga au      uauaaua  
ucu    uacA          AG       Ug    u    -  ucuuu     -   c     g  c  u    g uc      -c      u   a  ---uuc       u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR159a-5p

• Accession: MIMAT0057894
• Description: Cucumis melo cme-miR159a-5p mature miRNA
• Sequence: 7 - GAGCUCCUUGAAGUCCAAUA - 26
• Evidence: experimental ; unknown

Mature cme-miR159a-3p

• Accession: MIMAT0026160
• Description: Cucumis melo cme-miR159a-3p mature miRNA
• Sequence: 180 - UUUGGAUUGAAGGGAGCUCUA - 200
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877